Blue Gene 2002

 IBM and NeSC workshop on Protein Science

    National e-Science Centre, Edinburgh,  March 15-16 2002

   
   

WHY DO PROTEINS, AND OTHER SYSTEMS CRYSTALLIZE SOMETIMES-AND NOT OTHERS

K. A. Dawson

    New proteins are easy to make nowadays,including those that are not naturally occurring. However, many attempts to create new proteins lead to failure because they are not crystallizable, and therefore not characterizable. There may be a number of reasons.
Amongst these is misfolding, aggregation, and gellation.
Prominent amongst these is the fact that, even if well-folded, proteins are very hard to crystallize.
    We study two simple models of colloidal systems, proteins, and other meso-nanoscopic objects to develop an understanding of the factors leading to good crystals, rather than amorphous matter. In both cases, the attractions between particles are considered to be attractive and short ranged, in line with modern opinion on that topic.
    We argue that the main features of this type of problem are similar to other issues such as protein folding, that have multiple minima and produce 'glassy' phenomena. Here, however, the lack of moleular connectivity in the problem simplifies it somewhat, and leads us to be able to make progress in theory and simulation.
    When the multiple minimum aspect of the system predominates, we find glasses, gels, and similar materials. The main challenge is to understand the control parameters of the system, and thereby make it possible to form good (say protein) crystals, rather than disordered materials.

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National e-Science Centre (NeSC)
The University of Edinburgh
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